Software engineer
- Location
- San Francisco
- Type
- Full time
- Compensation
- $150k-$200k
- Posted
- 2 days ago
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Our lab aims to understand the molecular mechanisms of lung development and repair. The individual hired will primarily be involved in phenotypic and molecular analysis of mouse models of lung development and repair. This work requires tissue collection, processing, and analysis, molecular biology and biochemistry techniques, and data analysis, including transcriptomics and epigenomics.
Required Qualifications
Preferred Qualifications
%
of time
Essential Function (Yes/No)
Key Responsibilities
(To be completed by Supervisor)
25
YesUnder supervision, perform molecular biology/biochemistry experiments
• genomic DNA isolation
• RNA isolation
• protein isolation
• agarose gel electrophoresis
• isolation of DNA from agarose gel
• ligation of DNA
• transformation of DNA
• mini- and maxi-preparation of DNA
• PCR and qPCR
• Western blotting
• sgRNA design
25
YesUnder supervision, perform phenotypic and molecular analysis of mouse models of lung development and repair, tissue collection, processing and analysis
• general mouse husbandry
• lung dissection (including perfusion)
• fixation, embedding, and sectioning of lungs
• antibody staining of lung tissues (whole mount and
section)
• EdU and Tunnel staining of lung tissues
25
YesUnder supervision, perform cell culture and cell-based studies
• lung cell isolation
• organoid culture
• transduction of lung cells with candidate genes or libraries
• CRISPR and CRISPR screens of lung cells
25
YesUnder supervision, perform data analysis
• Bulk RNA-seq
• scRNA-seq
• Multi-omics
• ATAC-seq
• Spatial transcriptomics
• CUT&RUN
• CRISPR screens
100%
(To update total %, enter the amount of time in whole numbers (without the % symbol - e.g., 15, 20) then highlight the total sum (e.g., 1%) at the bottom of the column and press F9. The total sum should add up to 100%.)